CDS
| Accession Number | TCMCG006C74113 |
| gbkey | CDS |
| Protein Id | XP_013701360.1 |
| Location | complement(join(17425776..17426195,17426303..17426425,17426511..17426619,17426795..17426876,17427085..17427292,17427366..17427527,17427607..17427741,17427858..17427980)) |
| Gene | LOC106405346 |
| GeneID | 106405346 |
| Organism | Brassica napus |
Protein
| Length | 453aa |
| Molecule type | protein |
| Topology | linear |
| Data_file_division | PLN |
| dblink | BioProject:PRJNA293435 |
| db_source | XM_013845906.2 |
| Definition | probable polygalacturonase At3g15720 isoform X1 [Brassica napus] |
EGGNOG-MAPPER Annotation
| COG_category | G |
| Description | glycoside hydrolase family 28 protein polygalacturonase (pectinase) family protein |
| KEGG_TC | - |
| KEGG_Module |
M00081
[VIEW IN KEGG] |
| KEGG_Reaction |
R01982
[VIEW IN KEGG] R02360 [VIEW IN KEGG] |
| KEGG_rclass |
RC00049
[VIEW IN KEGG] |
| BRITE |
ko00000
[VIEW IN KEGG] ko00001 [VIEW IN KEGG] ko00002 [VIEW IN KEGG] ko01000 [VIEW IN KEGG] |
| KEGG_ko |
ko:K01184
[VIEW IN KEGG] |
| EC |
3.2.1.15
[VIEW IN KEGG]
[VIEW IN INGREDIENT] |
| KEGG_Pathway |
ko00040
[VIEW IN KEGG] ko01100 [VIEW IN KEGG] map00040 [VIEW IN KEGG] map01100 [VIEW IN KEGG] |
| GOs |
GO:0005575
[VIEW IN EMBL-EBI] GO:0005618 [VIEW IN EMBL-EBI] GO:0005623 [VIEW IN EMBL-EBI] GO:0005886 [VIEW IN EMBL-EBI] GO:0009505 [VIEW IN EMBL-EBI] GO:0016020 [VIEW IN EMBL-EBI] GO:0030312 [VIEW IN EMBL-EBI] GO:0031224 [VIEW IN EMBL-EBI] GO:0031225 [VIEW IN EMBL-EBI] GO:0031226 [VIEW IN EMBL-EBI] GO:0044425 [VIEW IN EMBL-EBI] GO:0044459 [VIEW IN EMBL-EBI] GO:0044464 [VIEW IN EMBL-EBI] GO:0046658 [VIEW IN EMBL-EBI] GO:0071944 [VIEW IN EMBL-EBI] |
Sequence
| CDS: ATGCAGAAGAAGACTTGGATCTTAAATTTCTCAGTGTTCTTTCTCCATATCTTTACATCTTCGAGAGCATTGGATGTTAGTCAATACGGAGCGATTGGAGATGGAGTTACAGACGATTCTCAGGCGTTCTTGAAAGCCTGGGAAGCTGTCTGTATCGGGACAGGGGATGGGCAGCTTATCGTTCCGGCAGGGATGACATTTGTGTTACAGCCCTTGAAGTTTCAAGGTTCTTGCAAATCGACCCCTATTGTTGTTCAGATTTTGGGCAATATGGTTGCATCAAGTAGAGGGAATTGGGAAGGAGACAAAGATCAATGGATTCTCTTCTCAGACATAGAAGGGCTCGTGGTTGAAGGCAACGGCGTAATTAACGGCCAGGGTTCGAGCTGGTGGGAACACAAAGGGAGTTCTAGACCAACCGCATTGAAGTTCAAGAGCTGCAACAACCTTAGACTAAGTGGACTAACGCACGTAGATAGTGCAAAGGCTCACATTCATATAAACAATTGCAACGGTGTGAGCATCTCAAATCTCCGGATAAATGCACCGGAGTCAAGTCCTAACACTGATGGAATCGACGTCGCTGCTTCATCCAATGTTATCATCCAGGATTGCGTAATCGCCACAGGTGACGATTGCATTGCGATAAACTCGGGGACGTCTAACATCAGAGTTTCCGGTATAGATTGCGGACCAGGCCATGGAATAAGCATAGGAAGCTTGGGAAAAGATGGAGAGACAGCTTCAGTGGAGGATATATGTGTCCAAAACTGTAACTTTAGAGGGACTACGAATGGGGCTCGGATCAAAACCTGGCCGGGAGGATCAGGTTACGCAAGAAGGATTACTTTCAGTGGAATTACTCTAGATAACGTGGAAAACCCGATCATAATCGATCAACATTACAACAATGGAGGTTCTGAGAAAAATACAGATGATAAGTCATCGGCGGTTGAAGTAAGCAAAGTCGTGTATAGTAATTTCGTGGGGACGTCCAAGTCAGAGTACGGAGTTGACTTTAGGTGTAGCGCGGCTGTACCATGCACAGAAATTTTTATGAAAGATGTGAGAATAGAAACACCATCATCAGGATCAGGACAAGTCGCGCAAGGACAGTGCTTCAACGTGAGAGGTGTGTCCACACTTGCCGTACCAGGTTTAGAATGTTTAGCACTTTCCACAGATATGTTATCATCGGCGGAGTTGCCGGAACAAACTTGTATGTTGCCGCAACCATCAGTGCAACCAAGTACACGACCGATGCAAGATCCATTTTGGGTTTATGGAAGCGGAGGGAAACGACTCAGAGTTTTTGATGTAGTATTAACTTCATTTATATTTGTCGTTTTATATATGTATTAG |
| Protein: MQKKTWILNFSVFFLHIFTSSRALDVSQYGAIGDGVTDDSQAFLKAWEAVCIGTGDGQLIVPAGMTFVLQPLKFQGSCKSTPIVVQILGNMVASSRGNWEGDKDQWILFSDIEGLVVEGNGVINGQGSSWWEHKGSSRPTALKFKSCNNLRLSGLTHVDSAKAHIHINNCNGVSISNLRINAPESSPNTDGIDVAASSNVIIQDCVIATGDDCIAINSGTSNIRVSGIDCGPGHGISIGSLGKDGETASVEDICVQNCNFRGTTNGARIKTWPGGSGYARRITFSGITLDNVENPIIIDQHYNNGGSEKNTDDKSSAVEVSKVVYSNFVGTSKSEYGVDFRCSAAVPCTEIFMKDVRIETPSSGSGQVAQGQCFNVRGVSTLAVPGLECLALSTDMLSSAELPEQTCMLPQPSVQPSTRPMQDPFWVYGSGGKRLRVFDVVLTSFIFVVLYMY |